10X Genomics linked-reads of the P24XY chromosomal race of the Vandie... - SRA

SRX9290764: 10X Genomics linked-reads of the P24XY chromosomal race of the Vandiemella viatica species group: adult male
1 ILLUMINA (HiSeq X Ten) run: 90.2M spots, 27.2G bases, 9.9Gb downloads

Design: Sequencing libraries were prepared as recommended by Chromium Genome preparation kit (10X Genomics, Inc., Pleasanton, CA, USA; Cat No. 120215). Paired-end read sequencing (2x150 bp) was performed on the Illumina HiSeq X (Illumina, Inc., San Diego, CA, USA) using the Chromium library.

Submitted by: Uppsala University

Study: Vandiemenella viatica Genome sequencing and assembly.

PRJNA668746 • SRP287256 • All experiments • All runs

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This BioProject contains genomic and transcriptomic data related to the paper Palacios-Gimenez et al., "Too much too many: comparative analysis of morabine grasshopper genomes reveals highly abundant transposable elements and rapidly proliferating satellite DNA repeats". We combined linked-read genomics with transcriptomics to assemble, characterize, and compare the structure of the repetitive DNA and its contribution to genome evolution, in four chromosomal races of the morabine grasshopper Vandiemenella viatica species complex.

Sample: Invertebrate sample from the P24XY chromosomal race of Vandiemenella viatica species complex

SAMN16427124 • SRS7517628 • All experiments • All runs

Organism: Vandiemenella viatica

Library:

Name: RK-2015-P24XYmaleCA9_S10_L005_R1_001

Instrument: HiSeq X Ten

Strategy: WGS

Source: GENOMIC

Selection: unspecified

Layout: PAIRED

Runs: 1 run, 90.2M spots, 27.2G bases, 9.9Gb

Run	# of Spots	# of Bases	Size	Published
SRR12823129	90,185,969	27.2G	9.9Gb	2020-11-30

ID:: 12120984

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